miRBase entry: ath-MIR4240

Stem-loop ath-MIR4240


Accession
MI0015820
Description
Arabidopsis thaliana ath-MIR4240 precursor miRNA
Gene family
MIPF0001198; MIR4240


Sequence

cuuucguagccaugaaguuaauggcuagagUGACUAGACCCGUAACAUUACcauauaucauuugaacugaaauuuguuuguucugaggauuauuuuucaagauaucaaaacgaagauaaguggcugcacaaacuuuuuuuagcgaauauaucguuauguuaucgggucuagcacucuauccacugauuucaugaccacgagccuc
..(((((.(.((((((((((.(((.(((((((.(((((((((((((((.((.((((((...(((..((((((...((((((((((((((....))))).)))((((........)))).........))))))...))))))))))))))).)).)))))).)))))))))))))))).))).)))))))))).).)))))....

Structure
--cu     a c          a   c       A         -      U  c      cau   aa      uuu      -------------------------   -     u 
    uucgu g caugaaguua ugg uagagUG CUAGACCCG UAACAU AC auauau   uug  cugaaa   guuugu                         ucu gagga u
    ||||| | |||||||||| ||| ||||||| ||||||||| |||||| || ||||||   |||  ||||||   ||||||                         ||| |||||  
    gagca c guacuuuagu acc aucucac gaucugggc auugua ug uauaua   agc  gauuuu   caaaca                         aga cuuuu a
cucc     c a          c   u       -         u      u  c      ---   --      uuu      cgucggugaauagaagcaaaacuau   a     u 


Annotation confidence Not enough data
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Genome context
chr4: 10711558-10711762 [-]

Database links

Mature ath-miR4240

Accession MIMAT0017948
Description Arabidopsis thaliana ath-miR4240 mature miRNA
Sequence 31 - UGACUAGACCCGUAACAUUAC - 51
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103

  2. PubMed ID: 21357774
    MicroRNA activity in the Arabidopsis male germline
    "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
    "J Exp Bot (2011) 62:1611-1620