Stem-loop ath-MIR4243

Accession

MI0015821

Description

Arabidopsis thaliana ath-MIR4243 precursor miRNA

Gene family

MIPF0001170; MIR4243

Sequence

aaagaaccgugaauuacagUUGAAAUUGUAGAUUUCGUACaugacaauaauuugcucgagcaucacuuucaugauuuuguggucuguguugccguauuugagagcauacauuucauguucgaaaucuacgauuuuaacucuaauuuuuggaugguucuuuauuucaauuacagagggau
((((((((((((((((.((((((((((((((((((((.((((((.(((....(((((..(((.(((..((((......))))...))).))).........)))))...))))))))).)))))))))))))))))))).))))))....))))))))))...................

Structure

-------------------          ----      c                    U      c   aauu     -------ga   u   -uu    ga 
                   aaagaaccgu    gaauua agUUGAAAUUGUAGAUUUCG ACauga aau    ugcuc         gca cac   ucau  u
                   ||||||||||    |||||| |||||||||||||||||||| |||||| |||    |||||         ||| |||   ||||   
                   uuucuuggua    uuuaau ucaauuuuagcaucuaaagc uguacu uua    acgag         cgu gug   ggug  u
uagggagacauuaacuuua          gguu      c                    u      -   -cau     aguuuaugc   u   ucu    uu 

Annotation confidence Not enough data

Genome context

chr5: 19567208-19567386 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR4243

Mature ath-miR4243

• Accession: MIMAT0017949
• Description: Arabidopsis thaliana ath-miR4243 mature miRNA
• Sequence: 20 - UUGAAAUUGUAGAUUUCGUAC - 40
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103