miRBase entry: ssc-mir-194b

Stem-loop ssc-mir-194b


Accession
MI0015905
Description
Sus scrofa ssc-mir-194b precursor miRNA
Gene family
MIPF0000055; mir-194

Literature search
12 open access papers mention ssc-mir-194b
(34 sentences)

Sequence

cgccaucagcUGUAACAGCGACUCCAUGUGGAcugugccccaauuuCCAGUGGAGAUGCUGUUACCUUugacggcgac
((((.((((..(((((((((.((((((.((((..((......)).)))))))))).)))))))))..)))).))))..

Structure
--    a    cU         A      G    cu  gc 
  cgcc ucag  GUAACAGCG CUCCAU UGGA  gu  c
  |||| ||||  ||||||||| |||||| ||||  ||   
  gcgg aguU  CAUUGUCGU GAGGUG ACCu  ua  c
ca    c    UC         A      -    -u  ac 


Annotation confidence Not enough data
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Genome context
chr10: 11786871-11786948 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-194b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-194b-3p

Accession MIMAT0017951
Description Sus scrofa ssc-miR-194b-3p mature miRNA
Sequence 47 - CCAGUGGAGAUGCUGUUACCUU - 68
Evidence experimental
Illumina [1]

Mature ssc-miR-194b-5p

Accession MIMAT0020365
Description Sus scrofa ssc-miR-194b-5p mature miRNA
Sequence 11 - UGUAACAGCGACUCCAUGUGGA - 32
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328