miRBase entry: 20433717

Deciphering the porcine intestinal microRNA transcriptome

PubMed ID 20433717
Authors Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
Journal BMC Genomics
Volume 11
Pages 275

There are 106 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
ssc-mir-499 MI0013096 61 chr17 43571146 43571225 + -
ssc-mir-143 MI0013098 12545 chr2 157344738 157344817 + High
ssc-mir-181d MI0013108 43 chr2 65553487 65553566 - -
ssc-mir-885 MI0013119 None None None -
ssc-mir-365-2 MI0013120 36 chr12 45152792 45152871 - High
ssc-mir-365-1 MI0013121 40 chr3 29976236 29976315 - -
ssc-mir-92b MI0013126 14 chr4 103407102 103407181 - -
ssc-mir-374a MI0013130 353 chrX 67530361 67530440 - High
ssc-mir-374b MI0013131 253 chrX 67425186 67425265 - -
ssc-mir-196b-1 MI0013137 6 chr18 49836543 49836622 + -
ssc-mir-450b MI0013140 238 chrUScaf3177 4358 4437 + -
ssc-mir-339-1 MI0013149 158 chr3 726710 726789 + -
ssc-mir-676-1 MI0013152 52 chrX 63280928 63281007 + -
ssc-mir-708 MI0013154 212 chr9 15120477 15120556 - High
ssc-mir-432 MI0013155 0 chr7 132079003 132079082 + -
ssc-mir-1839 MI0013162 4 chr7 57683204 57683283 - -
ssc-mir-194b MI0015905 0 chr10 11786871 11786948 - -
ssc-mir-296 MI0015906 31 chr17 66288704 66288780 - -
ssc-mir-155 MI0015907 49 chr13 199063344 199063424 - -
ssc-mir-411 MI0015908 36 None None -
ssc-mir-133a-2 MI0015909 39 chr6 99485213 99485285 + -
ssc-mir-4331-1 MI0015910 166703 chr6 60130099 60130178 - -
ssc-mir-382 MI0015911 4 None None -
ssc-mir-381 MI0015912 38 chrUScaf2115 27138 27219 - -
ssc-mir-362 MI0015913 140 chrX 48638466 48638544 + -
ssc-mir-490-1 MI0015914 10 chr18 13361980 13362058 - -
ssc-mir-376c MI0015915 0 chrUScaf2115 32036 32113 - -
ssc-mir-376b MI0015916 0 None None -
ssc-mir-4332 MI0015917 31 None None -
ssc-mir-652 MI0015919 34 chrUScaf2837 52753 52835 - -
ssc-mir-1224 MI0015920 None chr13 131580811 131580918 + -
ssc-mir-4334 MI0015921 100 chr15 134433005 134433073 + -
ssc-mir-1271 MI0015922 299 chr2 83154226 83154303 - -
ssc-mir-4335 MI0015923 53 None None -
ssc-mir-218-1 MI0015924 29 chr8 15443762 15443845 - -
ssc-mir-421 MI0015925 5 chrX 67425032 67425109 - -
ssc-mir-146a MI0015926 97 chr16 68394520 68394597 - -
ssc-mir-383 MI0015927 4 chr17 2603744 2603825 - -
ssc-mir-487b MI0015928 2 None None -
ssc-mir-484 MI0015929 10 None None -
ssc-mir-1296 MI0015931 23 chr14 72055628 72055712 - -
ssc-mir-4337 MI0015932 2 chr18 16110017 16110094 - -
ssc-mir-4338 MI0015933 0 chrUScaf3901 115019 115096 - -
ssc-mir-494 MI0015934 12 None None -
ssc-mir-4339 MI0015935 None None None -
ssc-mir-4333 MI0015918 2 None None -
ssc-mir-4336 MI0015930 17 None None -
hsa-let-7d MI0000065 4366 chr9 94178834 94178920 + High
hsa-mir-16-1 MI0000070 10398 chr13 50048973 50049061 - High
hsa-mir-19a MI0000073 9302 chr13 91350891 91350972 + High
hsa-mir-19b-1 MI0000074 12712 chr13 91351192 91351278 + High
hsa-mir-19b-2 MI0000075 12558 chrX 134169671 134169766 - High
hsa-mir-21 MI0000077 28570 chr17 59841266 59841337 + High
hsa-mir-22 MI0000078 2726 chr17 1713903 1713987 - High
hsa-mir-23a MI0000079 5463 chr19 13836587 13836659 - High
hsa-mir-24-1 MI0000080 2988 chr9 95086021 95086088 + High
hsa-mir-24-2 MI0000081 3119 chr19 13836287 13836359 - High
hsa-mir-26a-1 MI0000083 11638 chr3 37969404 37969480 + High
hsa-mir-27a MI0000085 3484 chr19 13836440 13836517 - High
hsa-mir-30a MI0000088 5468 chr6 71403551 71403621 - High
hsa-mir-16-2 MI0000115 10575 chr3 160404745 160404825 + High
hsa-mir-192 MI0000234 1383 chr11 64891137 64891246 - High
hsa-mir-214 MI0000290 943 chr1 172138798 172138907 - High
hsa-mir-215 MI0000291 146 chr1 220117853 220117962 - -
hsa-mir-23b MI0000439 4243 chr9 95085208 95085304 + -
hsa-mir-30b MI0000441 938 chr8 134800520 134800607 - High
hsa-mir-125b-1 MI0000446 5007 chr11 122099757 122099844 - High
hsa-mir-130a MI0000448 2307 chr11 57641198 57641286 + High
hsa-mir-145 MI0000461 20797 chr5 149430646 149430733 + High
hsa-mir-125b-2 MI0000470 5102 chr21 16590237 16590325 + High
hsa-mir-126 MI0000471 4188 chr9 136670602 136670686 + High
hsa-mir-194-1 MI0000488 266 chr1 220118157 220118241 - -
hsa-mir-155 MI0000681 459 chr21 25573980 25574044 + High
hsa-mir-194-2 MI0000732 297 chr11 64891355 64891439 - High
hsa-mir-26a-2 MI0000750 11698 chr12 57824609 57824692 - High
hsa-mir-374a MI0000782 1036 chrX 74287286 74287357 - High
ssc-mir-125b-2 MI0002414 595 None None -
ssc-mir-145 MI0002417 4593 chr2 157346127 157346212 + High
ssc-mir-19a MI0002422 635 chr11 66610343 66610424 + -
ssc-mir-23a MI0002427 341 chr2 65581838 65581907 + -
ssc-mir-24-1 MI0002428 1148 chr2 65582174 65582245 + High
ssc-mir-26a MI0002429 1295 chrUScaf3878 40640 40723 + -
ssc-mir-214 MI0002441 135 chr9 126099461 126099570 - High
ssc-mir-27a MI0002442 430 chr2 65582015 65582096 + -
ssc-mir-21 MI0002459 6294 chr12 37340385 37340476 + High
hsa-mir-488 MI0003123 56 chr1 177029363 177029445 - High
hsa-mir-421 MI0003685 455 chrX 74218377 74218461 - High
hsa-mir-374b MI0005566 1430 chrX 74218547 74218618 - High
ssc-mir-16-2 MI0008212 274 chrUScaf2048 70557 70635 + -
ssc-mir-16-1 MI0008213 291 chr13 108388290 108388366 + -
ssc-mir-30b MI0008215 100 chr4 6717643 6717718 + -
ssc-mir-130a MI0008217 31 chr2 12929884 12929962 - -
ssc-mir-215 MI0010687 0 chr10 11786567 11786662 - -
ssc-mir-30a MI0010688 1861 chr1 57750736 57750842 - High
ssc-mir-24-2 MI0013111 451 chr10 31340334 31340413 - -
ssc-mir-23b MI0013112 164 chr10 31341114 31341193 - -
ssc-mir-192 MI0013127 23 chr2 6416980 6417059 + -
ssc-mir-19b-2 MI0013159 1107 chrX 126199650 126199729 - -
ssc-mir-19b-1 MI0013160 1155 chr11 66610642 66610721 + -
ssc-mir-125b-1 MI0013172 534 chr9 54334908 54334987 - -
ssc-mir-22 MI0014770 249 None None High
hsa-mir-23c MI0016010 36 chrX 20017088 20017187 - -
ssc-mir-126 MI0016619 1833 chr1 313734669 313734741 + High
ssc-let-7d MI0022120 99 chr3 44867267 44867362 + -
ssc-mir-194a MI0022137 11 chr2 6416779 6416854 + -
ssc-mir-4331-2 MI0033415 29 chr14 144183485 144183553 + -



Comments or questions? Email mirbase@manchester.ac.uk