Stem-loop ssc-mir-125b-1

Accession

MI0013172

Description

Sus scrofa ssc-mir-125b-1 precursor miRNA

Literature search

23 open access papers mention ssc-mir-125b-1
(162 sentences)

Sequence

1817 reads, 406 reads per million, 13 experiments

ccucucagUCCCUGAGACCCUAACUUGUGAuguuuaccguuuaaauccacggguuaggcucuugggagcugcgagccgug
.(((.((((.(((((((.(((((((((((..(((((.....))))).))))))))))).))))))).)))).))).....

Structure

----c   u    C       C           Au     c 
     cuc cagU CCUGAGA CCUAACUUGUG  guuua c
     ||| |||| ||||||| |||||||||||  ||||| g
     gag gucg ggguucu ggauugggcac  uaaau u
gugcc   c    a       c           -c     u 

Annotation confidence Not enough data

Genome context

chr9: 54334908-54334987 [-]

Mature ssc-miR-125b

• Accession: MIMAT0002120
• Description: Sus scrofa ssc-miR-125b mature miRNA
• Sequence: 9 - UCCCUGAGACCCUAACUUGUGA - 30
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100