Accession
MI0002417
Description
Sus scrofa
ssc-mir-145 precursor miRNA
Literature search
24 open access papers mention ssc-mir-145
(65 sentences)
(65 sentences)
Sequence
10807
reads,
4593
reads per million, 14 experiments
caccuuguccucacgGUCCAGUUUUCCCAGGAAUCCCUUagaugcugagauggGGAUUCCUGGAAAUACUGUUCUugaggucaugg
..((.((.(((((.((..((((.((.((((((((((((.............)))))))))))).)).))))..))))))).)).))
..((.((.(((((.((..((((.((.((((((((((((.............)))))))))))).)).))))..))))))).)).))
Structure
ca u u c UC U C Uagau cc ug ccuca gG CAGU UU CCAGGAAUCCCU g || || ||||| || |||| || |||||||||||| c gg ac ggagu UC GUCA AA GGUCCUUAGGgg u -- u u - UU U A uagag
Annotation confidence
High
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Genome context
chr2: 157346127-157346212 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-145
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ssc-miR-145-5p
| Accession | MIMAT0002123 |
| Description | Sus scrofa ssc-miR-145-5p mature miRNA |
| Sequence | 16 - GUCCAGUUUUCCCAGGAAUCCCUU - 39 |
| Evidence |
experimental
cloned [2,4], Illumina [3,5-6] |
Mature ssc-miR-145-3p
| Accession | MIMAT0022919 |
| Description | Sus scrofa ssc-miR-145-3p mature miRNA |
| Sequence | 54 - GGAUUCCUGGAAAUACUGUUCU - 75 |
| Evidence |
experimental
Illumina [5] |
References
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