Stem-loop ssc-mir-218-1

Accession

MI0015924

Description

Sus scrofa ssc-mir-218-1 precursor miRNA

Literature search

6 open access papers mention ssc-mir-218-1
(33 sentences)

Sequence

589740 reads, 728.0 reads per million, 193 experiments

agauuuucugUUGUGCUUGAUCUAACCAUGUgguugccagguaugaguaAAACAUGGUUCUGUCAAGCACcauggaacgucacg
.(((.((((((.(((((((((..((((((((..((((((....)).)))).))))))))..))))))))).)))))).)))...

Structure

--a   u      U         CU        gg    -  g 
   gau uucugU GUGCUUGAU  AACCAUGU  uugc ca g
   ||| |||||| |||||||||  ||||||||  |||| ||  
   cug aaggua CACGAACUG  UUGGUACA  Aaug gu u
gca   c      c         UC        -A    a  a 

Annotation confidence Medium

Genome context

chr8: 15443762-15443845 [-]

Mature ssc-miR-218-5p

• Accession: MIMAT0022961
• Description: Sus scrofa ssc-miR-218-5p mature miRNA
• Sequence: 11 - UUGUGCUUGAUCUAACCAUGU - 31
• Evidence: experimental ; Illumina [2]

Mature ssc-miR-218-3p

• Accession: MIMAT0017969
• Description: Sus scrofa ssc-miR-218-3p mature miRNA
• Sequence: 50 - AAACAUGGUUCUGUCAAGCAC - 70
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328