Stem-loop ssc-mir-133a-2

Accession

MI0015909

Description

Sus scrofa ssc-mir-133a-2 precursor miRNA

Literature search

40 open access papers mention ssc-mir-133a-2
(192 sentences)

Sequence

30 reads, 39 reads per million, 9 experiments

uagAGCUGGUAAAAUGGAACCAAAUcgccucuucaauggauUUGGUCCCCUUCAACCAGCUGuagcuaugcau
((.(((((((..((.((.((((((((............)))))))).)).))..))))))).)).........

Structure

---------  g       AA  U  A        gccuc 
         ua AGCUGGU  AA GG ACCAAAUc     u
         || |||||||  || || ||||||||      
         au UCGACCA  UU CC UGGUUuag     u
uacguaucg  G       AC  C  C        guaac 

Annotation confidence Not enough data

Genome context

chr6: 99485213-99485285 [+]

Mature ssc-miR-133a-5p

• Accession: MIMAT0015299
• Description: Sus scrofa ssc-miR-133a-5p mature miRNA
• Sequence: 4 - AGCUGGUAAAAUGGAACCAAAU - 25
• Evidence: experimental ; cloned [3], Illumina [4]

Mature ssc-miR-133a-3p

• Accession: MIMAT0010186
• Description: Sus scrofa ssc-miR-133a-3p mature miRNA
• Sequence: 42 - UUGGUCCCCUUCAACCAGCUG - 62
• Evidence: experimental ; Illumina [5]

References

1. PubMed ID: 19196471
   Cloning, characterization and expression analysis of porcine microRNAs
   Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
   BMC Genomics (2009) 10:65


2. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


3. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


4. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


5. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100