Stem-loop ssc-mir-26a

Accession

MI0002429

Description

Sus scrofa ssc-mir-26a precursor miRNA

Literature search

66 open access papers mention ssc-mir-26a
(254 sentences)

Sequence

121299862 reads, 83460.0 reads per million, 214 experiments

ggcuguggcuggaUUCAAGUAAUCCAGGAUAGGCUguuuccaucugugaggCCUAUUCUUGAUUACUUGUUUCuggaggcagcu
((((((..(((((..(((((((((.((((((((((..............)))))))))).)))))))))..)))))..))))))

Structure

      gg     UU         C          guuucc 
ggcugu  cugga  CAAGUAAUC AGGAUAGGCU      a
||||||  |||||  ||||||||| ||||||||||       
ucgacg  gguCU  GUUCAUUAG UCUUAUCCgg      u
      ga     UU         U          aguguc 

Annotation confidence High

Genome context

chrUScaf3878: 40640-40723 [+]

Mature ssc-miR-26a-5p

• Accession: MIMAT0002135
• Description: Sus scrofa ssc-miR-26a-5p mature miRNA
• Sequence: 14 - UUCAAGUAAUCCAGGAUAGGCU - 35
• Evidence: experimental ; Illumina [2]

Mature ssc-miR-26a-3p

• Accession: MIMAT0052559
• Description: Sus scrofa ssc-miR-26a-3p mature miRNA
• Sequence: 52 - CCUAUUCUUGAUUACUUGUUUC - 73
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100