Stem-loop ssc-mir-155

Accession

MI0015907

Description

Sus scrofa ssc-mir-155 precursor miRNA

Literature search

92 open access papers mention ssc-mir-155
(269 sentences)

Sequence

879871 reads, 400.0 reads per million, 206 experiments

cuauaugcugUUAAUGCUAAUUGUGAUAGGGGUUuuuaccuccgucugaCUCCUACAUGUUAGCAUUAACAggguaugaug
.(((((.((((((((((((((.(((.((((((((.............))))))))))))))))))))))))).)))))...

Structure

--c     g              U   A        uuuac 
   uauau cugUUAAUGCUAAU GUG UAGGGGUU     c
   ||||| |||||||||||||| ||| ||||||||     u
   guaug gACAAUUACGAUUG UAC AUCCUCag     c
gua     g              -   -        ucugc 

Annotation confidence High

Genome context

chr13: 199063344-199063424 [-]

Mature ssc-miR-155-5p

• Accession: MIMAT0022959
• Description: Sus scrofa ssc-miR-155-5p mature miRNA
• Sequence: 11 - UUAAUGCUAAUUGUGAUAGGGGUU - 34
• Evidence: experimental ; Illumina [2]

Mature ssc-miR-155-3p

• Accession: MIMAT0017953
• Description: Sus scrofa ssc-miR-155-3p mature miRNA
• Sequence: 50 - CUCCUACAUGUUAGCAUUAACA - 71
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328