Stem-loop ssc-mir-362

Accession

MI0015913

Description

Sus scrofa ssc-mir-362 precursor miRNA

Literature search

7 open access papers mention ssc-mir-362
(11 sentences)

Sequence

230542 reads, 175.0 reads per million, 208 experiments

cccccucucaAAUCCUUGGAACCUAGGUGUGAGUGcugcucuagUGCAACACACCUAUUCAAGGAUUCAaagaggcuga
...(((((..((((((((((...((((((((.((((((...))))))..))))))))))))))))))...)))))....

Structure

-ccc     -ca          ACC        -A      c 
    ccucu   AAUCCUUGGA   UAGGUGUG  GUGcug  
    |||||   ||||||||||   ||||||||  |||||| u
    ggaga   UUAGGAACUU   AUCCACAC  CGUgau  
aguc     aAC          ---        AA      c 

Annotation confidence High

Genome context

chrX: 48638466-48638544 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ssc-mir-362

Mature ssc-miR-362-5p

• Accession: MIMAT0017958
• Description: Sus scrofa ssc-miR-362-5p mature miRNA
• Sequence: 11 - AAUCCUUGGAACCUAGGUGUGAGUG - 35
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-362-3p

• Accession: MIMAT0052655
• Description: Sus scrofa ssc-miR-362-3p mature miRNA
• Sequence: 45 - UGCAACACACCUAUUCAAGGAUUCA - 69
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100