Stem-loop ssc-mir-1296

Accession

MI0015931

Description

Sus scrofa ssc-mir-1296 precursor miRNA

Literature search

3 open access papers mention ssc-mir-1296
(5 sentences)

Sequence

15 reads, 23 reads per million, 6 experiments

ccuaacugggUUAGGGCCCUGGCUCCAUCUCCuuuaggaaaaccuucugugggGAGUGGGGUUUUGACCCUAACCcagcugggcu
((((.(((((((((((....(((((((.((((((..((((....))))..)))))))))))))....))))))))))).))))..

Structure

--    a           CCCU       U      ua    a 
  ccua cugggUUAGGG    GGCUCCA CUCCuu  ggaa a
  |||| |||||||||||    ||||||| ||||||  ||||  
  gggu gacCCAAUCCC    UUGGGGU GAGggg  ucuu c
uc    c           AGUU       -      ug    c 

Annotation confidence Not enough data

Genome context

chr14: 72055628-72055712 [-]

Mature ssc-miR-1296-3p

• Accession: MIMAT0017976
• Description: Sus scrofa ssc-miR-1296-3p mature miRNA
• Sequence: 54 - GAGUGGGGUUUUGACCCUAACC - 75
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-1296-5p

• Accession: MIMAT0022964
• Description: Sus scrofa ssc-miR-1296-5p mature miRNA
• Sequence: 11 - UUAGGGCCCUGGCUCCAUCUCC - 32
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328