Stem-loop ssc-mir-22

Accession

MI0014770

Description

Sus scrofa ssc-mir-22 precursor miRNA

Literature search

13 open access papers mention ssc-mir-22
(33 sentences)

Sequence

575 reads, 249 reads per million, 11 experiments

gagccgcaguAGUUCUUCAGUGGCAAGCUUUAuguccugacccagcuaAAGCUGCCAGUUGAAGAACUGUugcccucugc
(((..((((((((((((((((((((.((((((.((.........))))))))))))).))))))))))))))).)))...

Structure

---   cc               -     A      u  ccu 
   gag  gcaguAGUUCUUCAG UGGCA GCUUUA gu   g
   |||  ||||||||||||||| ||||| |||||| ||   a
   cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
cgu   -c               G     -      -  acc 

Annotation confidence High

Genome context

Unknown

Mature ssc-miR-22-5p

• Accession: MIMAT0015709
• Description: Sus scrofa ssc-miR-22-5p mature miRNA
• Sequence: 11 - AGUUCUUCAGUGGCAAGCUUUA - 32
• Evidence: experimental ; Illumina [1,3-4]

Mature ssc-miR-22-3p

• Accession: MIMAT0015710
• Description: Sus scrofa ssc-miR-22-3p mature miRNA
• Sequence: 49 - AAGCUGCCAGUUGAAGAACUGU - 70
• Evidence: experimental ; Illumina [1,3-4], cloned [2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100