Stem-loop ssc-mir-421

Accession

MI0015925

Description

Sus scrofa ssc-mir-421 precursor miRNA

Literature search

5 open access papers mention ssc-mir-421
(6 sentences)

Sequence

65151 reads, 60.0 reads per million, 204 experiments

acauuguaGGCCUCAUUAAAUGUUUGUUGaaugaaaaaaugaaucAUCAACAGACAUUAAUUGGGCGccugcucugug
(((..((((((((((...((((((((((((.(((.........)))))))))))))))...)))).))))))..))).

Structure

-   uu      -    UUA            a   aaa 
 aca  guaGGC CUCA   AAUGUUUGUUGa uga   a
 |||  |||||| ||||   |||||||||||| |||   a
 ugu  cguccG GGGU   UUACAGACAACU Acu   u
g   cu      C    UAA            -   aag 

Annotation confidence Medium

Genome context

chrX: 67425032-67425109 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-421

Mature ssc-miR-421-5p

• Accession: MIMAT0017970
• Description: Sus scrofa ssc-miR-421-5p mature miRNA
• Sequence: 9 - GGCCUCAUUAAAUGUUUGUUG - 29
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-421-3p

• Accession: MIMAT0022962
• Description: Sus scrofa ssc-miR-421-3p mature miRNA
• Sequence: 46 - AUCAACAGACAUUAAUUGGGCG - 67
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328