Stem-loop ssc-mir-381

Accession

MI0015912

Description

Sus scrofa ssc-mir-381 precursor miRNA

Literature search

3 open access papers mention ssc-mir-381
(5 sentences)

Sequence

24 reads, 38 reads per million, 9 experiments

ugguacuuaaAGCGAGGUUGCCCUUUGUAUAUUcggguuuugagguggaaUAUACAAGGACAAGCUCUCUGUgaguaucaaa
(((((((((.((.(((.(((.((((.((((((((.(.((...)).).)))))))))))).))).))).)).)))))))))..

Structure

--         a  C   G   C    U        g g  u 
  ugguacuua AG GAG UUG CCUU GUAUAUUc g uu  
  ||||||||| || ||| ||| |||| |||||||| | || u
  acuaugagU UC CUC AAC GGAA CAUAUaag u ga  
aa         G  U   G   A    -        g g  g 

Annotation confidence Not enough data

Genome context

chrUScaf2115: 27138-27219 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-mir-381

Mature ssc-miR-381-5p

• Accession: MIMAT0017957
• Description: Sus scrofa ssc-miR-381-5p mature miRNA
• Sequence: 11 - AGCGAGGUUGCCCUUUGUAUAUU - 33
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-381-3p

• Accession: MIMAT0037380
• Description: Sus scrofa ssc-miR-381-3p mature miRNA
• Sequence: 51 - UAUACAAGGACAAGCUCUCUGU - 72
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


2. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252