Stem-loop ssc-mir-383

Accession

MI0015927

Description

Sus scrofa ssc-mir-383 precursor miRNA

Literature search

5 open access papers mention ssc-mir-383
(7 sentences)

Sequence

63493 reads, 202.0 reads per million, 135 experiments

ccugcuccucAGAUCAGAAGGUGAUUGUGGCUUuggguagauauuaaucagCCACAGCACUGCCUGGUCAGAaagagcaagu
..(((((.((.((((((..((((.((((((((...(((........)))))))))))))))..)))))).))..)))))...

Structure

-cc     -c  A      AA    A        Uug   aga 
   ugcuc  uc GAUCAG  GGUG UUGUGGCU   ggu   u
   |||||  || ||||||  |||| ||||||||   |||    
   acgag  AG CUGGUC  UCAC GACACCga   cua   a
uga     aa  A      CG    -        ---   auu 

Annotation confidence High

Genome context

chr17: 2603744-2603825 [-]

Mature ssc-miR-383-5p

• Accession: MIMAT0052660
• Description: Sus scrofa ssc-miR-383-5p mature miRNA
• Sequence: 11 - AGAUCAGAAGGUGAUUGUGGCUU - 33
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-383-3p

• Accession: MIMAT0017972
• Description: Sus scrofa ssc-miR-383-3p mature miRNA
• Sequence: 52 - CCACAGCACUGCCUGGUCAGA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275