Stem-loop ssc-mir-126

Accession

MI0016619

Description

Sus scrofa ssc-mir-126 precursor miRNA

Literature search

23 open access papers mention ssc-mir-126
(94 sentences)

Sequence

5991 reads, 1833 reads per million, 15 experiments

cgacgggaCAUUAUUACUUUUGGUACGCGcugugacacuucaaacUCGUACCGUGAGUAAUAAUGCGcugucg
((((((..(((((((((((.(((((((.....(((....)))....))))))).)))))))))))..))))))

Structure

      ga           U       CGcug   c 
cgacgg  CAUUAUUACUU UGGUACG     uga a
||||||  ||||||||||| |||||||     |||  
gcuguc  GUAAUAAUGAG GCCAUGC     acu c
      GC           U       -Ucaa   u 

Annotation confidence High

Genome context

chr1: 313734669-313734741 [+]

Mature ssc-miR-126-5p

• Accession: MIMAT0018377
• Description: Sus scrofa ssc-miR-126-5p mature miRNA
• Sequence: 9 - CAUUAUUACUUUUGGUACGCG - 29
• Evidence: experimental ; cloned [1], Illumina [2]

Mature ssc-miR-126-3p

• Accession: MIMAT0018378
• Description: Sus scrofa ssc-miR-126-3p mature miRNA
• Sequence: 46 - UCGUACCGUGAGUAAUAAUGCG - 67
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328