Stem-loop ssc-mir-16-1

Accession

MI0008213

Description

Sus scrofa ssc-mir-16-1 precursor miRNA

Literature search

22 open access papers mention ssc-mir-16-1
(47 sentences)

Sequence

625 reads, 184 reads per million, 11 experiments

uccgcucUAGCAGCACGUAAAUAUUGGCGuaguaaaauaaauauuaaacaccaauauuauugugcugcuuuagcgug
..((((..(((((((((..((((((((.((((((.......))))..)).))))))))..)))))))))..))))..

Structure

uc    cU         UA        C  --    aa 
  cgcu  AGCAGCACG  AAUAUUGG Gu  agua  a
  ||||  |||||||||  |||||||| ||  ||||  u
  gcga  ucgucgugu  uuauaacc ca  uuau  a
gu    uu         ua        a  aa    aa 

Annotation confidence Not enough data

Genome context

chr13: 108388290-108388366 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-16-1

Mature ssc-miR-16

• Accession: MIMAT0007754
• Description: Sus scrofa ssc-miR-16 mature miRNA
• Sequence: 8 - UAGCAGCACGUAAAUAUUGGCG - 29
• Evidence: experimental ; cloned [1,3], Illumina [2,4-5]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 18548309
   Identification and characterization of new microRNAs from pig
   "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
   "Mamm Genome (2008) 19:570-580


4. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


5. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100