Accession
MI0008213
Description
Sus scrofa
ssc-mir-16-1 precursor miRNA
Literature search
24 open access papers mention ssc-mir-16-1
(54 sentences)
(54 sentences)
Sequence
7320372
reads,
4049.0
reads per million, 214 experiments
uccgcucUAGCAGCACGUAAAUAUUGGCGuaguaaaauaaauauuaaacACCAAUAUUAUUGUGCUGCUUUagcgug
..((((..(((((((((..((((((((.((((((.......))))..)).))))))))..)))))))))..))))..
..((((..(((((((((..((((((((.((((((.......))))..)).))))))))..)))))))))..))))..
Structure
uc cU UA C -- aa cgcu AGCAGCACG AAUAUUGG Gu agua a |||| ||||||||| |||||||| || |||| u gcga UCGUCGUGU UUAUAACC ca uuau a gu UU UA A aa aa
Annotation confidence
High
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Genome context
chr13: 108388290-108388366 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-16-1
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ssc-miR-16-5p
| Accession | MIMAT0007754 |
| Description | Sus scrofa ssc-miR-16-5p mature miRNA |
| Sequence | 8 - UAGCAGCACGUAAAUAUUGGCG - 29 |
| Evidence |
experimental
cloned [1,3], Illumina [2,4-5] |
Mature ssc-miR-16-1-3p
| Accession | MIMAT0052592 |
| Description | Sus scrofa ssc-miR-16-1-3p mature miRNA |
| Sequence | 50 - ACCAAUAUUAUUGUGCUGCUUU - 71 |
| Evidence |
experimental
cloned [1,3], Illumina [2,4-5] |
References
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