Stem-loop ssc-let-7d

Accession

MI0022120

Description

Sus scrofa ssc-let-7d precursor miRNA

Literature search

60 open access papers mention ssc-let-7d
(152 sentences)

Sequence

6596006 reads, 3023.0 reads per million, 214 experiments

guuccuaggaAGAGGUAGUAGGUUGCAUAGUUUuagggcagagauuuugcccacaaggagguaaCUAUACGACCUGCUGCCUUUCUuagggccuua
..((((((((.((((((((((((((.((((((...(((((((...)))))))..........)))))).)))))))))))))))))))))).....

Structure

---gu        A              C      -------Uua       g 
     uccuagga GAGGUAGUAGGUUG AUAGUU          gggcaga  
     |||||||| |||||||||||||| ||||||          ||||||| a
     gggauUCU UUCCGUCGUCCAGC UAUCaa          cccguuu  
auucc        -              A      uggaggaaca       u 

Annotation confidence High

Genome context

chr3: 44867267-44867362 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-let-7d

Mature ssc-let-7d-5p

• Accession: MIMAT0025356
• Description: Sus scrofa ssc-let-7d-5p mature miRNA
• Sequence: 11 - AGAGGUAGUAGGUUGCAUAGUUU - 33
• Evidence: experimental ; Illumina [1-2]

Mature ssc-let-7d-3p

• Accession: MIMAT0025357
• Description: Sus scrofa ssc-let-7d-3p mature miRNA
• Sequence: 65 - CUAUACGACCUGCUGCCUUUCU - 86
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100