Stem-loop ssc-mir-376c

Accession

MI0015915

Description

Sus scrofa ssc-mir-376c precursor miRNA

Literature search

4 open access papers mention ssc-mir-376c
(6 sentences)

Sequence

12729 reads, 14.0 reads per million, 140 experiments

uauuuaaaagGUGGAUAUUCCUUCUAUGUUUAuguuauuugugguuaAACAUAGAGGAAAUUCCACGUuuucaguauc
((((.((((.(((((..(((((.(((((((((.............))))))))))))))..))))).)))).))))..

Structure

--    u    g     UA     U         uguua 
  uauu aaaa GUGGA  UUCCU CUAUGUUUA     u
  |||| |||| |||||  ||||| |||||||||     u
  auga uuuU CACCU  AAGGA GAUACAAau     u
cu    c    G     UA     -         uggug 

Annotation confidence High

Genome context

chrUScaf2115: 32036-32113 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-mir-376c

Mature ssc-miR-376c-5p

• Accession: MIMAT0017960
• Description: Sus scrofa ssc-miR-376c-5p mature miRNA
• Sequence: 11 - GUGGAUAUUCCUUCUAUGUUUA - 32
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-376c-3p

• Accession: MIMAT0052656
• Description: Sus scrofa ssc-miR-376c-3p mature miRNA
• Sequence: 48 - AACAUAGAGGAAAUUCCACGU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275