Stem-loop ssc-mir-4334

Accession

MI0015921

Description

Sus scrofa ssc-mir-4334 precursor miRNA

Literature search

5 open access papers mention ssc-mir-4334
(7 sentences)

Sequence

319 reads, 100 reads per million, 11 experiments

cugugcugagCCCUGGAGUGACGGGGGUGaaagggcagagUCCCUGUCCUCCAGGAGCUCcccaugugg
..(((..(((((((((((.((((((((((......))...))))))))))))))).))))..)))....

Structure

--cu   cu    -       U        ---  aa 
    gug  gagC CCUGGAG GACGGGGG   UG  a
    |||  |||| ||||||| ||||||||   ||   
    uac  CUCG GGACCUC CUGUCCCU   ac  g
ggug   cc    A       -        gag  gg 

Annotation confidence Not enough data

Genome context

chr15: 134433005-134433073 [+]

Mature ssc-miR-4334-5p

• Accession: MIMAT0017966
• Description: Sus scrofa ssc-miR-4334-5p mature miRNA
• Sequence: 11 - CCCUGGAGUGACGGGGGUG - 29
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-4334-3p

• Accession: MIMAT0020366
• Description: Sus scrofa ssc-miR-4334-3p mature miRNA
• Sequence: 41 - UCCCUGUCCUCCAGGAGCUC - 60
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100