Stem-loop ssc-mir-23b

Accession

MI0013112

Description

Sus scrofa ssc-mir-23b precursor miRNA

Literature search

19 open access papers mention ssc-mir-23b
(38 sentences)

Sequence

205 reads, 164 reads per million, 12 experiments

cucuggcugcuuggguuccuggcaugcugauuugugacuuaagauuaaaAUCACAUUGCCAGGGAUUACCAcgcagccac
...(((((((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))))))).

Structure

cuc       u   --          -  c      gugacu 
   uggcugc ugg  guuccuggca ug ugauuu      u
   ||||||| |||  |||||||||| || ||||||       
   accgacg ACC  UAGGGACCGU AC ACUAaa      a
--c       c   AU          U  -      auuaga 

Annotation confidence Not enough data

Genome context

chr10: 31341114-31341193 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-mir-23b

Mature ssc-miR-23b

• Accession: MIMAT0013893
• Description: Sus scrofa ssc-miR-23b mature miRNA
• Sequence: 50 - AUCACAUUGCCAGGGAUUACCA - 71
• Evidence: experimental ; Illumina [1,3-4], cloned [2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100