Stem-loop ssc-mir-487b

Accession

MI0015928

Description

Sus scrofa ssc-mir-487b precursor miRNA

Literature search

6 open access papers mention ssc-mir-487b
(7 sentences)

Sequence

58799 reads, 107.0 reads per million, 150 experiments

uacuuggagaGUGGUUAUCCCUGUCCUGUUCGuuuuacucaugucgAAUCGUACAGGGUCAUCCACUUuuucaguauc
((((.(((((((((....((((((.(.(((((............))))).).))))))....))))))))).))))..

Structure

--    u         UUAU      C U     uuuua 
  uacu ggagaGUGG    CCCUGU C GUUCG     c
  |||| |||||||||    |||||| | |||||      
  auga uuuUUCACC    GGGACA G UAAgc     u
cu    c         UACU      U C     uguac 

Annotation confidence Medium

Genome context

Unknown

Mature ssc-miR-487b-5p

• Accession: MIMAT0017973
• Description: Sus scrofa ssc-miR-487b-5p mature miRNA
• Sequence: 11 - GUGGUUAUCCCUGUCCUGUUCG - 32
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-487b-3p

• Accession: MIMAT0052661
• Description: Sus scrofa ssc-miR-487b-3p mature miRNA
• Sequence: 47 - AAUCGUACAGGGUCAUCCACUU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275