Stem-loop ssc-mir-1224

Accession

MI0015920

Description

Sus scrofa ssc-mir-1224 precursor miRNA

Literature search

5 open access papers mention ssc-mir-1224
(6 sentences)

Sequence

16365 reads, 27.0 reads per million, 154 experiments

ccuacccuugGUGAGGACUCGGGAGGUGGAGgguggcgcugccagggccagggcacugucucagcucgcuucucccccCACCUCCUCUCUCCUCAGGUgcgguugcag
((((((.....((((((...(((((((((.(((.((((..((..(((.(((....))).))).)).))))...))).)))))))))...)))))))))).))......

Structure

------  -    cuugG      CUC         A   --u    cu  ca   c   g 
      cc uacc     UGAGGA   GGGAGGUGG Ggg   ggcg  gc  ggg cag g
      || ||||     ||||||   ||||||||| |||   ||||  ||  ||| |||  
      gg gUGG     ACUCCU   UCCUCCACc ccc   ucgc  cg  cuc guc c
gacguu  c    -----      CUC         c   ucu    -u  -a   u   a 

Annotation confidence High

Genome context

chr13: 131580811-131580918 [+]

Mature ssc-miR-1224-5p

• Accession: MIMAT0052659
• Description: Sus scrofa ssc-miR-1224-5p mature miRNA
• Sequence: 11 - GUGAGGACUCGGGAGGUGGAG - 31
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-1224-3p

• Accession: MIMAT0017965
• Description: Sus scrofa ssc-miR-1224-3p mature miRNA
• Sequence: 79 - CACCUCCUCUCUCCUCAGGU - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275