Stem-loop ssc-mir-432

Accession

MI0013155

Description

Sus scrofa ssc-mir-432 precursor miRNA

Literature search

11 open access papers mention ssc-mir-432
(31 sentences)

Sequence

29624 reads, 52.0 reads per million, 163 experiments

uccaggUCUUGGAGUAGGUCAUUGGGUGgauccuuuauuucccuaugugggccACUGGAUGGCUCCUCCAUGGCUuggag
((((((((.(((((..(((((((.(((((.(((..(((......))).)))))))).))))))).))))).)))))))).

Structure

-        U     UA       G     a   uu   uu 
 uccaggUC UGGAG  GGUCAUU GGUGg ucc  uau  c
 |||||||| |||||  ||||||| ||||| |||  |||   
 agguUCGG ACCUC  UCGGUAG UCAcc ggg  gua  c
g        U     -C       G     -   -u   uc 

Annotation confidence High

Genome context

chr7: 132079003-132079082 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-mir-432

Mature ssc-miR-432-5p

• Accession: MIMAT0013946
• Description: Sus scrofa ssc-miR-432-5p mature miRNA
• Sequence: 7 - UCUUGGAGUAGGUCAUUGGGUG - 28
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-432-3p

• Accession: MIMAT0017384
• Description: Sus scrofa ssc-miR-432-3p mature miRNA
• Sequence: 54 - ACUGGAUGGCUCCUCCAUGGCU - 75
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328