Stem-loop ssc-mir-1839

Accession

MI0013162

Description

Sus scrofa ssc-mir-1839 precursor miRNA

Literature search

1 open access papers mention ssc-mir-1839
(6 sentences)

Sequence

74094 reads, 43.0 reads per million, 196 experiments

ccuaaaugaaAAGGUAGAUAGAACAGGUCUUGUuugcaagaugaauucaAGACCUACUUUUCUACCAACAGCAauuacac
............((((((.(((..((((((((....((...))....))))))))..)))))))))..............

Structure

--ccuaaaugaaAA      U   AC        Uuug  a 
              GGUAGA AGA  AGGUCUUG    ca  
              |||||| |||  ||||||||    || g
              CCAUCU UUU  UCCAGAac    gu  
cacauuaACGACAA      -   CA        uuaa  a 

Annotation confidence Medium

Genome context

chr7: 57683204-57683283 [-]

Mature ssc-miR-1839-5p

• Accession: MIMAT0013952
• Description: Sus scrofa ssc-miR-1839-5p mature miRNA
• Sequence: 11 - AAGGUAGAUAGAACAGGUCUUGU - 33
• Evidence: experimental ; Illumina [1-4]

Mature ssc-miR-1839-3p

• Accession: MIMAT0017385
• Description: Sus scrofa ssc-miR-1839-3p mature miRNA
• Sequence: 50 - AGACCUACUUUUCUACCAACAGCA - 73
• Evidence: experimental ; Illumina [2-4]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100