Stem-loop ssc-mir-652

Accession

MI0015919

Description

Sus scrofa ssc-mir-652 precursor miRNA

Literature search

6 open access papers mention ssc-mir-652
(15 sentences)

Sequence

1441983 reads, 502.0 reads per million, 211 experiments

uaugcacugcACAACCCUAGGAGAGGGUGCCAUUCAcauagacuauaauugAAUGGCGCCACUAGGGUUGUGcagugcacaac
..((((((((((((((((((.....(((((((((((..((.....))..))))))))))).))))))))))))))))))....

Structure

--ua                  GAGAG           ca  g 
    ugcacugcACAACCCUAG     GGUGCCAUUCA  ua a
    ||||||||||||||||||     |||||||||||  || c
    acgugacGUGUUGGGAUC     CCGCGGUAAgu  au u
caac                  ----A           ua  a 

Annotation confidence High

Genome context

chrUScaf2837: 52753-52835 [-]

Mature ssc-miR-652-5p

• Accession: MIMAT0017964
• Description: Sus scrofa ssc-miR-652-5p mature miRNA
• Sequence: 11 - ACAACCCUAGGAGAGGGUGCCAUUCA - 36
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-652-3p

• Accession: MIMAT0052658
• Description: Sus scrofa ssc-miR-652-3p mature miRNA
• Sequence: 52 - AAUGGCGCCACUAGGGUUGUG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275