Stem-loop ssc-mir-92b

Accession

MI0013126

Description

Sus scrofa ssc-mir-92b precursor miRNA

Literature search

11 open access papers mention ssc-mir-92b
(25 sentences)

Sequence

6 reads, 14 reads per million, 4 experiments

gcgggcgggAGGGACGGGACGCGGUGCAGUGUUguucuuuccccugccaaUAUUGCACUCGUCCCGGCCUCCggcccccc
..((((.(((((..(((((((.((((((((((((..(........).))))))))))))))))))).))))).))))...

Structure

-gc    g     GA       C            uu uuu 
   gggc ggAGG  CGGGACG GGUGCAGUGUUg  c   c
   |||| |||||  ||||||| ||||||||||||  |    
   cccg CCUCC  GCCCUGC UCACGUUAUaac  g   c
ccc    g     -G       -            -c ucc 

Annotation confidence Not enough data

Genome context

chr4: 103407102-103407181 [-]

Mature ssc-miR-92b-5p

• Accession: MIMAT0017377
• Description: Sus scrofa ssc-miR-92b-5p mature miRNA
• Sequence: 10 - AGGGACGGGACGCGGUGCAGUGUU - 33
• Evidence: experimental ; Illumina [2-4]

Mature ssc-miR-92b-3p

• Accession: MIMAT0013909
• Description: Sus scrofa ssc-miR-92b-3p mature miRNA
• Sequence: 51 - UAUUGCACUCGUCCCGGCCUCC - 72
• Evidence: experimental ; Illumina [1-4]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100