Accession
MI0013098
Description
Sus scrofa
ssc-mir-143 precursor miRNA
Literature search
31 open access papers mention ssc-mir-143
(113 sentences)
(113 sentences)
Sequence
50217
reads,
12545
reads per million, 15 experiments
gucccccagccggaGGUGCAGUGCUGCAUCUCUGGucagcugggagucUGAGAUGAAGCACUGUAGCUCgggaagggaga
.((.(((..((.(((.(((((((((.((((((.((((......)).)).)))))).))))))))).))).))..))).))
.((.(((..((.(((.(((((((((.((((((.((((......)).)).)))))).))))))))).))).))..))).))
Structure
g c ag g G G U - ag uc ccc cc gaG UGCAGUGCU CAUCUC GG uc c || ||| || ||| ||||||||| |||||| || || ag ggg gg CUC AUGUCACGA GUAGAG cu ag u - a aa g G A U g gg
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chr2: 157344738-157344817 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-143
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ssc-miR-143-5p
| Accession | MIMAT0017374 |
| Description | Sus scrofa ssc-miR-143-5p mature miRNA |
| Sequence | 15 - GGUGCAGUGCUGCAUCUCUGG - 35 |
| Evidence |
experimental
Illumina [2,4-5] |
Mature ssc-miR-143-3p
| Accession | MIMAT0013879 |
| Description | Sus scrofa ssc-miR-143-3p mature miRNA |
| Sequence | 49 - UGAGAUGAAGCACUGUAGCUC - 69 |
| Evidence |
experimental
Illumina [1-2,4-5], cloned [3] |
References
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