Stem-loop ssc-mir-411

Accession

MI0015908

Description

Sus scrofa ssc-mir-411 precursor miRNA

Literature search

6 open access papers mention ssc-mir-411
(8 sentences)

Sequence

315658 reads, 464.0 reads per million, 175 experiments

cuuggagagAUAGUAGACCGUAUAGCGUACGcuuuaucugugacguAUGUAACACGGUCCACUAACccucaguauc
....(((.(.((((.((((((...((((((((.........).)))))))...)))))).)))).).)))......

Structure

--cuug   a A    A      AUA       - uuu 
      gag g UAGU GACCGU   GCGUACG c   a
      ||| | |||| ||||||   ||||||| |   u
      cuc C AUCA CUGGCA   UGUAugc g   c
cuauga   c A    C      CAA       a ugu 

Annotation confidence High

Genome context

Unknown

Mature ssc-miR-411-5p

• Accession: MIMAT0052653
• Description: Sus scrofa ssc-miR-411-5p mature miRNA
• Sequence: 10 - AUAGUAGACCGUAUAGCGUACG - 31
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-411-3p

• Accession: MIMAT0017954
• Description: Sus scrofa ssc-miR-411-3p mature miRNA
• Sequence: 47 - AUGUAACACGGUCCACUAAC - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275