Stem-loop ssc-mir-196b-1

Accession

MI0013137

Description

Sus scrofa ssc-mir-196b-1 precursor miRNA

Literature search

14 open access papers mention ssc-mir-196b-1
(31 sentences)

Sequence

449913 reads, 205.0 reads per million, 165 experiments

cuggucggugauuUAGGUAGUUUCCUGUUGUUGGGauccaccuuucucUCGACAGCACGACACUGCCUUcauuacuucag
((((..((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..))))))))))

Structure

    uc      uU       U  C           ucca 
cugg  ggugau  AGGUAGU UC UGUUGUUGGGa    c
||||  ||||||  ||||||| || |||||||||||     
gacu  ucauua  UCCGUCA AG ACGACAGCUcu    c
    --      cU       C  C           cuuu 

Annotation confidence High

Genome context

chr18: 49836543-49836622 [+]

Mature ssc-miR-196b-5p

• Accession: MIMAT0013923
• Description: Sus scrofa ssc-miR-196b-5p mature miRNA
• Sequence: 14 - UAGGUAGUUUCCUGUUGUUGGG - 35
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-196b-3p

• Accession: MIMAT0017379
• Description: Sus scrofa ssc-miR-196b-3p mature miRNA
• Sequence: 49 - UCGACAGCACGACACUGCCUU - 69
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100