Stem-loop ssc-mir-4338

Accession

MI0015933

Description

Sus scrofa ssc-mir-4338 precursor miRNA

Literature search

1 open access papers mention ssc-mir-4338
(1 sentences)

Sequence

5427 reads, 5.0 reads per million, 153 experiments

aucucucgagAUGUUCAGUCUCAGUGGGAACCguguguaagucuugUUCCCAUUGAGACUGAGCAUCUcaagggauca
((((((.((((((((((((((((((((((((..............)))))))))))))))))))))))).))))))..

Structure

--      c                        Cgugug 
  aucucu gagAUGUUCAGUCUCAGUGGGAAC      u
  |||||| ||||||||||||||||||||||||       
  uaggga cUCUACGAGUCAGAGUUACCCUUg      a
ac      a                        uucuga 

Annotation confidence High

Genome context

chrUScaf3901: 115019-115096 [-]

Mature ssc-miR-4338-5p

• Accession: MIMAT0017978
• Description: Sus scrofa ssc-miR-4338-5p mature miRNA
• Sequence: 11 - AUGUUCAGUCUCAGUGGGAACC - 32
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-4338-3p

• Accession: MIMAT0052663
• Description: Sus scrofa ssc-miR-4338-3p mature miRNA
• Sequence: 47 - UUCCCAUUGAGACUGAGCAUCU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275