Stem-loop ssc-mir-146a

Accession

MI0015926

Description

Sus scrofa ssc-mir-146a precursor miRNA

Literature search

25 open access papers mention ssc-mir-146a
(212 sentences)

Sequence

222 reads, 62 reads per million, 11 experiments

uacucagcuuUGAGAACUGAAUUCCAUGGGUUgugucauugucagaCCUGUGAAGUUUAGUUCUUCAGcugggauauc
..(((((((..((((((((((((.((((((((.((.......)))))))))).)))))))))))).))))))).....

Structure

---ua       uU            C        g  uc 
     cucagcu  GAGAACUGAAUU CAUGGGUU ug  a
     |||||||  |||||||||||| |||||||| ||  u
     gggucGA  UUCUUGAUUUGA GUGUCCag ac  u
cuaua       -C            A        -  ug 

Annotation confidence Not enough data

Genome context

chr16: 68394520-68394597 [-]

Mature ssc-miR-146a-3p

• Accession: MIMAT0017971
• Description: Sus scrofa ssc-miR-146a-3p mature miRNA
• Sequence: 47 - CCUGUGAAGUUUAGUUCUUCAG - 68
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-146a-5p

• Accession: MIMAT0022963
• Description: Sus scrofa ssc-miR-146a-5p mature miRNA
• Sequence: 11 - UGAGAACUGAAUUCCAUGGGUU - 32
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328