Stem-loop ssc-mir-708

Accession

MI0013154

Description

Sus scrofa ssc-mir-708 precursor miRNA

Literature search

6 open access papers mention ssc-mir-708
(17 sentences)

Sequence

409 reads, 212 reads per million, 14 experiments

cccucAAGGAGCUUACAAUCUAGCUGGGggugaaugacuugcacaugaacgCAACUAGACUGUGAGCUUCUAGAgggcag
(((((.(((((((((((.(((((....(.((..(((.......)))..)).)..))))).))))))))))).)))))...

Structure

---     A           A     CUGG g  ga   ac 
   cccuc AGGAGCUUACA UCUAG    G gu  aug  u
   ||||| ||||||||||| |||||    | ||  |||  u
   gggAG UCUUCGAGUGU AGAUC    C ca  uac  g
gac     A           C     --AA g  ag   ac 

Annotation confidence High

Genome context

chr9: 15120477-15120556 [-]

Mature ssc-miR-708-5p

• Accession: MIMAT0013945
• Description: Sus scrofa ssc-miR-708-5p mature miRNA
• Sequence: 6 - AAGGAGCUUACAAUCUAGCUGGG - 28
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-708-3p

• Accession: MIMAT0017383
• Description: Sus scrofa ssc-miR-708-3p mature miRNA
• Sequence: 52 - CAACUAGACUGUGAGCUUCUAGA - 74
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328