Stem-loop sequence ssc-mir-155

Accession

MI0015907 (change log)

Description

Sus scrofa miR-155 stem-loop

Gene family

MIPF0000157; mir-155

Literature search

28 open access papers mention ssc-mir-155
(111 sentences)

Stem-loop

   --c     g              u   a        uuu  c 
5'    uauau cuguuaaugcuaau gug uagggguu   ac u
      ||||| |||||||||||||| ||| ||||||||   ||  
3'    guaug gacaauuacgauug uac auccucag   ug c
   gua     g              -   -        -uc  c 

Deep sequencing

396 reads, 13.3 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (Sscrofa10.2; GCA_000003025.4)	Overlapping transcripts
chr13: 199063344-199063424 [-]	intergenic
chrUScaf2553: 133183-133263 [-]	intergenic

Database links

• EntrezGene:MIR155
• miRBase Tracker:MI0015907

Mature sequence ssc-miR-155-5p

• Accession: MIMAT0022959
• Sequence: 11 - uuaaugcuaauugugauagggg - 32
• Deep sequencing: 392 reads, 15 experiments
• Evidence: experimental; Illumina [2]

Mature sequence ssc-miR-155-3p

• Accession: MIMAT0017953
• Previous IDs: ssc-miR-155
• Sequence: 51 - uccuacauguuagcauuaaca - 71
• Deep sequencing: 4 reads, 3 experiments
• Evidence: experimental; Illumina [1-2]

References

1. PMID:20433717 "Deciphering the porcine intestinal microRNA transcriptome" Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler PF, Rajewsky N, Einspanier R BMC Genomics. 11:275(2010).
2. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).