miRBase entry: ssc-mir-155

Stem-loop ssc-mir-155


Accession
MI0015907
Description
Sus scrofa ssc-mir-155 precursor miRNA
Gene family
MIPF0000157; mir-155

Literature search
28 open access papers mention ssc-mir-155
(111 sentences)

Sequence

31 reads, 49 reads per million, 9 experiments
cuauaugcugUUAAUGCUAAUUGUGAUAGGGGuuuuuaccuccgucugacUCCUACAUGUUAGCAUUAACAggguaugaug
.(((((.((((((((((((((.(((.((((((((.............))))))))))))))))))))))))).)))))...

Structure
--c     g              U   A        uuuac 
   uauau cugUUAAUGCUAAU GUG UAGGGGuu     c
   ||||| |||||||||||||| ||| ||||||||     u
   guaug gACAAUUACGAUUG UAC AUCCUcag     c
gua     g              -   -        ucugc 


Annotation confidence Not enough data
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Genome context
chr13: 199063344-199063424 [-]

Database links

Mature ssc-miR-155-3p

Accession MIMAT0017953
Description Sus scrofa ssc-miR-155-3p mature miRNA
Sequence 51 - UCCUACAUGUUAGCAUUAACA - 71
Evidence experimental
Illumina [1-2]

Mature ssc-miR-155-5p

Accession MIMAT0022959
Description Sus scrofa ssc-miR-155-5p mature miRNA
Sequence 11 - UUAAUGCUAAUUGUGAUAGGGG - 32
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328