miRBase entry: ssc-mir-411

Stem-loop ssc-mir-411


Accession
MI0015908
Description
Sus scrofa ssc-mir-411 precursor miRNA
Gene family
MIPF0000126; mir-379

Literature search
3 open access papers mention ssc-mir-411
(5 sentences)

Sequence

52 reads, 36 reads per million, 8 experiments
cuuggagagauaguagaccguauagcguacgcuuuaucugugacguAUGUAACACGGUCCACUAACccucaguauc
....(((.(.((((.((((((...((((((((.........).)))))))...)))))).)))).).)))......

Structure
--cuug   a a    a      aua       - uuu 
      gag g uagu gaccgu   gcguacg c   a
      ||| | |||| ||||||   ||||||| |   u
      cuc C AUCA CUGGCA   UGUAugc g   c
cuauga   c A    C      CAA       a ugu 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssc-miR-411

Accession MIMAT0017954
Description Sus scrofa ssc-miR-411 mature miRNA
Sequence 47 - AUGUAACACGGUCCACUAAC - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275