miRBase entry: ssc-mir-4331-1

Stem-loop ssc-mir-4331-1


Accession
MI0015910
Description
Sus scrofa ssc-mir-4331-1 precursor miRNA

Literature search
2 open access papers mention ssc-mir-4331-1
(44 sentences)

Sequence

20 reads, 166703 reads per million, 9 experiments
ccaugagcuaUGGCGUAGAUCACAGACACAGCucagaucuggcauugcUGUGGCUGUGGUGUAGGCCAGCagcuuugcuc
....(((((.((((.((.(((((((.((((((..............)))))).))))))).)).))))..))))).....

Structure
-ccau     -a    G  G       A      ucagau 
     gagcu  UGGC UA AUCACAG CACAGC      c
     |||||  |||| || ||||||| ||||||       
     uucga  ACCG AU UGGUGUC GUGUcg      u
cucgu     CG    G  G       G      uuacgg 


Annotation confidence Not enough data
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Genome context
chr6: 60130099-60130178 [-]

Database links

Mature ssc-miR-4331-3p

Accession MIMAT0017955
Description Sus scrofa ssc-miR-4331-3p mature miRNA
Sequence 49 - UGUGGCUGUGGUGUAGGCCAGC - 70
Evidence experimental
Illumina [1-2]

Mature ssc-miR-4331-5p

Accession MIMAT0037379
Description Sus scrofa ssc-miR-4331-5p mature miRNA
Sequence 11 - UGGCGUAGAUCACAGACACAGC - 32
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100

  3. PubMed ID: 25230983
    The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
    "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
    "J Appl Genet (2015) 56:239-252