miRBase entry: ssc-mir-381

Stem-loop ssc-mir-381


Accession
MI0015912
Description
Sus scrofa ssc-mir-381 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
3 open access papers mention ssc-mir-381
(5 sentences)

Sequence

24 reads, 38 reads per million, 9 experiments
ugguacuuaaAGCGAGGUUGCCCUUUGUAUAUUcggguuuugagguggaaUAUACAAGGACAAGCUCUCUGUgaguaucaaa
(((((((((.((.(((.(((.((((.((((((((.(.((...)).).)))))))))))).))).))).)).)))))))))..

Structure
--         a  C   G   C    U        g g  u 
  ugguacuua AG GAG UUG CCUU GUAUAUUc g uu  
  ||||||||| || ||| ||| |||| |||||||| | || u
  acuaugagU UC CUC AAC GGAA CAUAUaag u ga  
aa         G  U   G   A    -        g g  g 


Annotation confidence Not enough data
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Genome context
chrUScaf2115: 27138-27219 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-mir-381
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-381-5p

Accession MIMAT0017957
Description Sus scrofa ssc-miR-381-5p mature miRNA
Sequence 11 - AGCGAGGUUGCCCUUUGUAUAUU - 33
Evidence experimental
Illumina [1]

Mature ssc-miR-381-3p

Accession MIMAT0037380
Description Sus scrofa ssc-miR-381-3p mature miRNA
Sequence 51 - UAUACAAGGACAAGCUCUCUGU - 72
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  2. PubMed ID: 25230983
    The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
    "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
    "J Appl Genet (2015) 56:239-252