miRBase entry: ssc-mir-362

Stem-loop ssc-mir-362


Accession
MI0015913
Description
Sus scrofa ssc-mir-362 precursor miRNA
Gene family
MIPF0000209; mir-362

Literature search
5 open access papers mention ssc-mir-362
(8 sentences)

Sequence

186 reads, 140 reads per million, 11 experiments
cccccucucaAAUCCUUGGAACCUAGGUGUGAGUGcugcucuagugcaacacaccuauucaaggauucaaagaggcuga
...(((((..((((((((((...((((((((.((((((...))))))..))))))))))))))))))...)))))....

Structure
-ccc     -ca          ACC        -A      c 
    ccucu   AAUCCUUGGA   UAGGUGUG  GUGcug  
    |||||   ||||||||||   ||||||||  |||||| u
    ggaga   uuaggaacuu   auccacac  cgugau  
aguc     aac          ---        aa      c 


Annotation confidence Not enough data
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Genome context
chrX: 48638466-48638544 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ssc-mir-362
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-362

Accession MIMAT0017958
Description Sus scrofa ssc-miR-362 mature miRNA
Sequence 11 - AAUCCUUGGAACCUAGGUGUGAGUG - 35
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100