miRBase entry: ssc-mir-4332

Stem-loop ssc-mir-4332


Accession
MI0015917
Description
Sus scrofa ssc-mir-4332 precursor miRNA

Literature search
3 open access papers mention ssc-mir-4332
(11 sentences)

Sequence

17 reads, 31 reads per million, 5 experiments
cggcggggggugucgcgggggugggcgggcuggggccggggguggggccggcgggggcacgacccccggucggcgucCACGGCCGCCGCCGGGCGCCuuuccaccgc
(((.((((((((((.(((.(((((.((((.((.((((((((((.(.(((......))).).))))))))))..)).)).)).))))).))))))))).)))).))).

Structure
-   c    -      g   g     g  -  c  -g          g g   gg 
 cgg gggg gguguc cgg ggugg cg gg ug  ggccgggggu g gcc  c
 ||| |||| |||||| ||| ||||| || || ||  |||||||||| | |||   
 gcc ccuu CCGCGG GCC CCGCC GC Cc gc  cuggccccca c cgg  g
c   a    u      -   G     G  A  u  gg          g a   gg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssc-miR-4332

Accession MIMAT0017962
Description Sus scrofa ssc-miR-4332 mature miRNA
Sequence 78 - CACGGCCGCCGCCGGGCGCC - 97
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100