Stem-loop sequence ssc-mir-652

AccessionMI0015919 (change log)
DescriptionSus scrofa miR-652 stem-loop
Gene family MIPF0000333; mir-652
Literature search

2 open access papers mention ssc-mir-652
(8 sentences)

Stem-loop 
   --ua                  gagag           ca  g 
5'     ugcacugcacaacccuag     ggugccauuca  ua a
       ||||||||||||||||||     |||||||||||  || c
3'     acgugacguguugggauc     ccgcgguaagu  au u
   caac                  ----a           ua  a
Get sequence
Deep sequencing
567 reads, 21.4 reads per million, 14 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chrUScaf2837: 52753-52835 [-]
intergenic
Database links

Mature sequence ssc-miR-652

Accession MIMAT0017964
Sequence

11 -  

acaacccuaggagagggugccauuca

 - 36

Get sequence
Deep sequencing23 reads, 8 experiments
Evidence experimental; Illumina [1]

References

1
PMID:20433717 "Deciphering the porcine intestinal microRNA transcriptome" Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler PF, Rajewsky N, Einspanier R BMC Genomics. 11:275(2010).