miRBase entry: ssc-mir-1224

Stem-loop ssc-mir-1224


Accession
MI0015920
Description
Sus scrofa ssc-mir-1224 precursor miRNA
Gene family
MIPF0000440; mir-1224

Literature search
3 open access papers mention ssc-mir-1224
(3 sentences)

Sequence

ccuacccuuggugaggacucgggagguggaggguggcgcugccagggccagggcacugucucagcucgcuucucccccCACCUCCUCUCUCCUCAGGUgcgguugcag
((((((.....((((((...(((((((((.(((.((((..((..(((.(((....))).))).)).))))...))).)))))))))...)))))))))).))......

Structure
------  -    cuugg      cuc         a   --u    cu  ca   c   g 
      cc uacc     ugagga   gggaggugg ggg   ggcg  gc  ggg cag g
      || ||||     ||||||   ||||||||| |||   ||||  ||  ||| |||  
      gg gUGG     ACUCCU   UCCUCCACc ccc   ucgc  cg  cuc guc c
gacguu  c    -----      CUC         c   ucu    -u  -a   u   a 


Annotation confidence Not enough data
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Genome context
chr13: 131580811-131580918 [+]

Database links

Mature ssc-miR-1224

Accession MIMAT0017965
Description Sus scrofa ssc-miR-1224 mature miRNA
Sequence 79 - CACCUCCUCUCUCCUCAGGU - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275