Stem-loop sequence ssc-mir-1224

Accession

MI0015920 (change log)

Description

Sus scrofa miR-1224 stem-loop

Gene family

MIPF0000440; mir-1224

Literature search

3 open access papers mention ssc-mir-1224
(3 sentences)

Stem-loop

   ------  -    cuugg      cuc         a   --u   --    --c   g  c 
5'       cc uacc     ugagga   gggaggugg ggg   ggc  gcug   cag gc a
         || ||||     ||||||   ||||||||| |||   |||  ||||   ||| ||  
3'       gg gugg     acuccu   uccuccacc ccc   ucg  cgac   guc cg g
   gacguu  c    -----      cuc         c   ucu   cu    ucu   a  g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr13: 131580811-131580918 [+]
• Overlapping transcripts:

  sense

  ENSSSCT00000027265 ; VWA5B2-201; 3'UTR (exon 21)

Database links

• EntrezGene:MIR1224
• miRBase Tracker:MI0015920

Mature sequence ssc-miR-1224

• Accession: MIMAT0017965
• Sequence: 79 - caccuccucucuccucaggu - 98
• Evidence: experimental; Illumina [1]

References

1. PMID:20433717 "Deciphering the porcine intestinal microRNA transcriptome" Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler PF, Rajewsky N, Einspanier R BMC Genomics. 11:275(2010).