miRBase entry: ssc-mir-4334

Stem-loop ssc-mir-4334


Accession
MI0015921
Description
Sus scrofa ssc-mir-4334 precursor miRNA

Literature search
5 open access papers mention ssc-mir-4334
(7 sentences)

Sequence

319 reads, 100 reads per million, 11 experiments
cugugcugagCCCUGGAGUGACGGGGGUGaaagggcagagUCCCUGUCCUCCAGGAGCUCcccaugugg
..(((..(((((((((((.((((((((((......))...))))))))))))))).))))..)))....

Structure
--cu   cu    -       U        ---  aa 
    gug  gagC CCUGGAG GACGGGGG   UG  a
    |||  |||| ||||||| ||||||||   ||   
    uac  CUCG GGACCUC CUGUCCCU   ac  g
ggug   cc    A       -        gag  gg 


Annotation confidence Not enough data
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Genome context
chr15: 134433005-134433073 [+]

Database links

Mature ssc-miR-4334-5p

Accession MIMAT0017966
Description Sus scrofa ssc-miR-4334-5p mature miRNA
Sequence 11 - CCCUGGAGUGACGGGGGUG - 29
Evidence experimental
Illumina [1]

Mature ssc-miR-4334-3p

Accession MIMAT0020366
Description Sus scrofa ssc-miR-4334-3p mature miRNA
Sequence 41 - UCCCUGUCCUCCAGGAGCUC - 60
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100