Stem-loop sequence ssc-mir-218-1

Accession

MI0015924 (change log)

Previous IDs

ssc-mir-218

Description

Sus scrofa miR-218-1 stem-loop

Gene family

MIPF0000026; mir-218

Literature search

6 open access papers mention ssc-mir-218-1
(31 sentences)

Stem-loop

   --a   u      u         cu        gg    -  g 
5'    gau uucugu gugcuugau  aaccaugu  uugc ca g
      ||| |||||| |||||||||  ||||||||  |||| ||  
3'    cug aaggua cacgaacug  uugguaca  aaug gu u
   gca   c      c         uc        -a    a  a 

Deep sequencing

581 reads, 41.7 reads per million, 12 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr8: 15443762-15443845 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR218
• miRBase Tracker:MI0015924

Mature sequence ssc-miR-218-5p

• Accession: MIMAT0022961
• Sequence: 11 - uugugcuugaucuaaccaugu - 31
• Deep sequencing: 581 reads, 12 experiments
• Evidence: experimental; Illumina [2]

Mature sequence ssc-miR-218-3p

• Accession: MIMAT0017969
• Previous IDs: ssc-miR-218
• Sequence: 54 - augguucugucaagcaccaug - 74
• Evidence: experimental; Illumina [1-2]

References

1. PMID:20433717 "Deciphering the porcine intestinal microRNA transcriptome" Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler PF, Rajewsky N, Einspanier R BMC Genomics. 11:275(2010).
2. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).