miRBase entry: ssc-mir-218-1

Stem-loop ssc-mir-218-1


Accession
MI0015924
Description
Sus scrofa ssc-mir-218-1 precursor miRNA
Gene family
MIPF0000026; mir-218

Literature search
6 open access papers mention ssc-mir-218-1
(31 sentences)

Sequence

20 reads, 29 reads per million, 6 experiments
agauuuucugUUGUGCUUGAUCUAACCAUGUgguugccagguaugaguaaaacAUGGUUCUGUCAAGCACCAUGgaacgucacg
.(((.((((((.(((((((((..((((((((..((((((....)).)))).))))))))..))))))))).)))))).)))...

Structure
--a   u      U         CU        gg    -  g 
   gau uucugU GUGCUUGAU  AACCAUGU  uugc ca g
   ||| |||||| |||||||||  ||||||||  |||| ||  
   cug aagGUA CACGAACUG  UUGGUAca  aaug gu u
gca   c      C         UC        -a    a  a 


Annotation confidence Not enough data
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Genome context
chr8: 15443762-15443845 [-]

Database links

Mature ssc-miR-218-3p

Accession MIMAT0017969
Description Sus scrofa ssc-miR-218-3p mature miRNA
Sequence 54 - AUGGUUCUGUCAAGCACCAUG - 74
Evidence experimental
Illumina [1-2]

Mature ssc-miR-218-5p

Accession MIMAT0022961
Description Sus scrofa ssc-miR-218-5p mature miRNA
Sequence 11 - UUGUGCUUGAUCUAACCAUGU - 31
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328