miRBase entry: ssc-mir-421

Stem-loop ssc-mir-421


Accession
MI0015925
Description
Sus scrofa ssc-mir-421 precursor miRNA
Gene family
MIPF0000098; mir-95

Literature search
4 open access papers mention ssc-mir-421
(5 sentences)

Sequence

5 reads, 5 reads per million, 3 experiments
acauuguaggCCUCAUUAAAUGUUUGUUGAAUGAaaaaaugaaucAUCAACAGACAUUAAUUGGGCGCcugcucugug
(((..((((((((((...((((((((((((.(((.........)))))))))))))))...)))).))))))..))).

Structure
-   uu      -    UUA            A   aaa 
 aca  guaggC CUCA   AAUGUUUGUUGA UGA   a
 |||  |||||| ||||   |||||||||||| |||   a
 ugu  cgucCG GGGU   UUACAGACAACU Acu   u
g   cu      C    UAA            -   aag 


Annotation confidence Not enough data
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Genome context
chrX: 67425032-67425109 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-421
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-421-5p

Accession MIMAT0017970
Description Sus scrofa ssc-miR-421-5p mature miRNA
Sequence 11 - CCUCAUUAAAUGUUUGUUGAAUGA - 34
Evidence experimental
Illumina [1-2]

Mature ssc-miR-421-3p

Accession MIMAT0022962
Description Sus scrofa ssc-miR-421-3p mature miRNA
Sequence 46 - AUCAACAGACAUUAAUUGGGCGC - 68
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328