miRBase entry: ssc-mir-146a

Stem-loop ssc-mir-146a


Accession
MI0015926
Description
Sus scrofa ssc-mir-146a precursor miRNA
Gene family
MIPF0000103; mir-146

Literature search
25 open access papers mention ssc-mir-146a
(212 sentences)

Sequence

222 reads, 97 reads per million, 11 experiments
uacucagcuuUGAGAACUGAAUUCCAUGGGUUgugucauugucagaCCUGUGAAGUUUAGUUCUUCAGcugggauauc
..(((((((..((((((((((((.((((((((.((.......)))))))))).)))))))))))).))))))).....

Structure
---ua       uU            C        g  uc 
     cucagcu  GAGAACUGAAUU CAUGGGUU ug  a
     |||||||  |||||||||||| |||||||| ||  u
     gggucGA  UUCUUGAUUUGA GUGUCCag ac  u
cuaua       -C            A        -  ug 


Annotation confidence Not enough data
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Genome context
chr16: 68394520-68394597 [-]

Database links

Mature ssc-miR-146a-3p

Accession MIMAT0017971
Description Sus scrofa ssc-miR-146a-3p mature miRNA
Sequence 47 - CCUGUGAAGUUUAGUUCUUCAG - 68
Evidence experimental
Illumina [1-2]

Mature ssc-miR-146a-5p

Accession MIMAT0022963
Description Sus scrofa ssc-miR-146a-5p mature miRNA
Sequence 11 - UGAGAACUGAAUUCCAUGGGUU - 32
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328