miRBase entry: ssc-mir-1296

Stem-loop ssc-mir-1296


Accession
MI0015931
Description
Sus scrofa ssc-mir-1296 precursor miRNA
Gene family
MIPF0000649; mir-1296

Literature search
3 open access papers mention ssc-mir-1296
(5 sentences)

Sequence

15 reads, 23 reads per million, 6 experiments
ccuaacugggUUAGGGCCCUGGCUCCAUCUCCuuuaggaaaaccuucugugggGAGUGGGGUUUUGACCCUAACCcagcugggcu
((((.(((((((((((....(((((((.((((((..((((....))))..)))))))))))))....))))))))))).))))..

Structure
--    a           CCCU       U      ua    a 
  ccua cugggUUAGGG    GGCUCCA CUCCuu  ggaa a
  |||| |||||||||||    ||||||| ||||||  ||||  
  gggu gacCCAAUCCC    UUGGGGU GAGggg  ucuu c
uc    c           AGUU       -      ug    c 


Annotation confidence Not enough data
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Genome context
chr14: 72055628-72055712 [-]

Database links

Mature ssc-miR-1296-3p

Accession MIMAT0017976
Description Sus scrofa ssc-miR-1296-3p mature miRNA
Sequence 54 - GAGUGGGGUUUUGACCCUAACC - 75
Evidence experimental
Illumina [1-2]

Mature ssc-miR-1296-5p

Accession MIMAT0022964
Description Sus scrofa ssc-miR-1296-5p mature miRNA
Sequence 11 - UUAGGGCCCUGGCUCCAUCUCC - 32
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328