Stem-loop ssc-mir-494

Accession

MI0015934

Description

Sus scrofa ssc-mir-494 precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

3 open access papers mention ssc-mir-494
(3 sentences)

Sequence

11 reads, 12 reads per million, 6 experiments

cucgaaggagAGGUUGUCGUGUUGUCUUCUCUuuacuuaugaugaaacauacacgggaaaccucuuuuggaguau
(((..((((((((((.(((((((((.(((((.........)).)))))).))))))..)))))))))).)))...

Structure

---   ga          -G      -   C   -  Uuu 
   cuc  aggagAGGUU  UCGUGU UGU UUC UC   a
   |||  ||||||||||  |||||| ||| ||| ||   c
   gag  uuuucuccaa  ggcaca aca aag ag   u
uau   -g          ag      u   -   u  uau 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssc-miR-494

• Accession: MIMAT0017979
• Description: Sus scrofa ssc-miR-494 mature miRNA
• Sequence: 11 - AGGUUGUCGUGUUGUCUUCUCU - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275