miRBase entry: ssc-mir-4339

Stem-loop ssc-mir-4339


Accession
MI0015935
Description
Sus scrofa ssc-mir-4339 precursor miRNA

Literature search
3 open access papers mention ssc-mir-4339
(3 sentences)

Sequence

cugugcuccgGCUCUGAGCUGCCCCUCCUCGUCCguccccuccagcuggagaggagccgcgacagagccggagcaguggc
(..(((((((((((((...(((..((((((.(((((........)).)))))))))..))).)))))))))))))..)..

Structure
-- ug             AGC   CC      G   -  ccc 
  c  ugcuccgGCUCUG   UGC  CUCCUC UCC gu   c
  |  |||||||||||||   |||  |||||| ||| ||    
  g  acgaggccgagac   gcg  gaggag agg cg   u
cg ug             --a   cc      -   u  acc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssc-miR-4339

Accession MIMAT0017980
Description Sus scrofa ssc-miR-4339 mature miRNA
Sequence 11 - GCUCUGAGCUGCCCCUCCUCGUCC - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275