Stem-loop sequence bta-mir-3601

Accession

MI0015947 (change log)

Description

Bos taurus miR-3601 stem-loop

Literature search

1 open access papers mention bta-mir-3601
(1 sentences)

Stem-loop

     -     c    a uu    a  -      a  -   ac 
5' cc cagac uuuc g  auca uc ugucac ag ugc  a
   || ||||| |||| |  |||| || |||||| || |||   
3' gg gucug agag c  uagu ag acagug uc aug  g
     a     u    c cc    -  u      c  u   gu 

Deep sequencing

1 reads, 0 reads per million, 1 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 18283115-18283192 [+]
• Overlapping transcripts:

  antisense

  ENSBTAT00000042403 ; bta-mir-542-201; exon 1

Clustered miRNAs

< 10kb from bta-mir-3601

• bta-mir-450b: chrX: 18281872-18281957 [-]
• bta-mir-450a-1: chrX: 18282042-18282123 [-]
• bta-mir-450a-2: chrX: 18282193-18282284 [-]
• bta-mir-542: chrX: 18283105-18283201 [-]
• bta-mir-3601: chrX: 18283115-18283192 [+]
• bta-mir-503: chrX: 18288067-18288149 [-]
• bta-mir-424: chrX: 18288411-18288506 [-]

Database links

• EntrezGene:MIR3601
• miRBase Tracker:MI0015947

Mature sequence bta-miR-3601

• Accession: MIMAT0016936
• Sequence: 45 - ucucgugacaugaugauccccga - 67
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-3601

References

1. PMID:19765282 "Identification and characterization of miRNAs expressed in the bovine ovary" Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D BMC Genomics. 10:443(2009).